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Core-Related Publications

Affymetrix arrays

1999

  1. Cardenas ME, Cutler NS, Lorenz MC, Di Como CJ, and Heitman J. The TOR signaling cascade regulates gene expression in response to nutrients. Genes & Dev. 1999 13, 3271-3279.

2000

  1. Fenrick R, Wang L, Nip J, Amann JM, Rooney RJ, Walker-Daniels J, Crawford HC, Hulboy DL, Kinch MS, Matrisian LM, Hiebert SW. (2000) TEL, a putative tumor suppressor, modulates cell growth and cell morphology of ras-transformed cells while repressing the transcription of stromelysin-1 Mol Cell Biol. Aug;20(16):5828-39.

2001

  1. Ishida S, Huang E, Zuzan H, Spang R, Leone G, West M, Nevins JR. Role for E2F in control of both DNA replication and mitotic functions as revealed from DNA microarray analysis.  Mol Cell Biol. 2001 Jul;21(14):4684-99.
  2. West M, Blanchette C, Dressman H, Huang E, Ishida S, Spang R, Zuzan H, Olson JA Jr, Marks JR, Nevins JR. Predicting the clinical status of human breast cancer by using gene expression profiles. Proc Natl Acad Sci 2001 Sep 25;98(20):11462-7.

2002

  1. Spang, R., Zuzan, H., West, M., Nevins, J., Blanchette, Marks, J.R.
  2. Prediction and uncertainty in the analysis of gene expression profiles. In Silico Biol. 2002 2: 0033.

2003

  1. Wenham RM, Calingaert B, Ali S, McClean K, Whitaker R, Bentley R, Lancaster JM, Schildkraut J, Marks J, Berchuck A. Matrix metalloproteinase-1 gene promoter polymorphism and risk of ovarian cancer. J Soc Gynecol Investig. 2003 10:381-7.
  2. Lo WR, Rowlette LL, Caballero M, Yang P, Hernandez MR, Borras T. Tissue differential microarray analysis of dexamethasone induction reveals potential mechanisms of steroid glaucoma. Invest Ophthalmol Vis Sci. 2003  44(2):473-85.
  3. Huang, E., West, M., and Nevins, J. R. Gene Expression Profiling for Prediction of Clinical Characteristics of Breast Cancer. Recent Prog. Horm. Res. 2003  58, 55-73.
  4. Huang, E., Cheng, S. H., Dressman, H., Pittman, J., Tsou, M.-H., Horng, C.-F., Bild, A., Iversen, E. S., Liao, M., Chen, C.-M., West, M., Nevins, J. R., and Huang, A. T. Gene expression predictors of breast cancer outcomes. Lancet 2003  361, 1590-1596.
  5. Black, E. P., Huang, E., Dressman, H., Ishida, S., West, M., and Nevins, J. R. Distinct gene expression phenotypes of cells lacking Rb and Rb family members. Cancer Res. 2003  63, 3716-3723.
  6. Huang, E., Ishida, S., Pittman, J., Dressman, H., Bild, A., Kloos, M., D'Amico, M., Pestell, R. G., West, M., and Nevins, J. R. Gene expression phenotypic models that predict the activity of oncogenic pathways. Nat. Genet. 2003  34, 226-230.
  7. Blaxall BC, Tschannen-Moran BM, Milano CA, Koch WJ. Differential gene expression and genomic patient stratification following left ventricular assist device support. J Am Coll Cardiol. 2003  41(7):1096-106.
  8. Huang, E. S. Black, E.P., Dressman, H., West, M., and Nevins, J. R. Gene expression phenotypes of oncogenic signaling pathways. Cell Cycle 2003   2(5):415-7.
  9. Nevins, J. R., Huang, E. S., Huang, A. T., Dressman, H., Pittman, J., and West, M. Towards integrated clinico-genomic models for personalized medicine: combining gene expression signatures and clinical factors in breast cancer outcomes prediction. Hum. Mol. Gen.  2003    12 Suppl 2:R153-7.
  10. Ellis, MJ, Rosen E, Dressman H., and Marks J. Neoadjuvant comparisons of aromatase inhibitors and tamoxifen: pretreatment determinants of response and on-treatment effect. J Steroid Biochem Mol Biol. 2003   86:301-307.
  11. Blaxall BC, Spang R, Rockman HA, Koch WJ. Differential Myocardial Gene Expression in the Development and Rescue of Murine Heart Failure. Physiol. Genomics 2003 15:105-114.
  12. Kenneth Birnbaum, Dennis E. Shasha, Jean Y. Wang,Jee W. Jung,Georgina M. Lambert, David W. Galbraith, Philip N. Benfey. A Gene Expression Map of the Arabidopsis Root. Science 2003   302:1956-1960.

2004

  1. Berchuck, A., Iversen, E.S., Lancaster, J.M., Dressman, H.K., West, M., Nevins, J.R., and Marks, J.R.  Prediction of optimal versus suboptimal cytoreduction of advanced stage serous ovarian cancer using microarrays. Am J Obstet Gynecol. 2004, 190:910-925.
  2. Lancaster, J. M., Dressman, H. K., Whitaker, R. S., Wenham, R. M., Marks, J. R., Nevins, J. R., and Berchuck, A. Gene expression patterns distinguish advanced stage serous ovarian cancers. J. Soc. Gyn. Invest. 2004, 11:51-59.
  3. Advani AS,  Dressman HK, Quiroz M, Taylor G,  Pendergast AM.   Elevated expression of a subset of interferon inducible genes in primary bone marrow cells expressing p185 Bcr-Abl versus p210 Bcr-Abl by DNA microarray analysis. Leukemia Research  2004 28: 285-294.
  4. Schulz A,  Dhar S, Rylova S,  Dbaibo G,  Alroy J,  Hagel C,  Artacho I, Kohlschu¨tter A,  Lin S, and Rose-Mary Boustany.  Impaired Cell Adhesion and Apoptosis in a Novel CLN9 Batten Disease Variant. Ann Neurol  2004 56:342-350.
  5. Seo D, Wang T, Dressman HK,  Herderick, EE,  Iversen, ES,  Dong C,  Vata, K, Milano CA, Rigat F, Pittman J, Nevins JR, West M, and Goldschmidt-Clermont PJ. Gene Expression Phenotypes of Atherosclerosis. Arterioscler. Thromb. Vasc. Biol. 2004 24:1922-1927.
  6. Hashimoto T., Lawton MT, Yang G-Y, Wen G., Chaly T Jr., Stewart CL., Dressman HK, Barbaro NM, Marchuck DA, Young WL. Gene Microarray Analysis of Human Brian Arteriovenous Malformations. Neurosurgery 2004  54:410-423.
  7. Pittman, J., Huang E., Dressman H, Horng, CF., Cheng, SH, Tsou MH, Chin CM, Bild, A., Iversen ES, Huang A, Nevins, JR., and West, M. Integrated modeling of clinical and gene expression information for personalized prediction of disease outcomes. PNAS 2004 June 1; 101(22):8431-8436.
  8. Yao WD, Gainetdinov RR, Arbuckle MI, Sotnikova TD, Cyr M, Beaulieu JM, Torres GE, Grant SG, Caron MG. Identification of PSD-95 as a regulator of dopamine-mediated synaptic and behavioral plasticity. Neuron. 2004  19;41(4):625-38.
  9. Maddala R, Deng PF, Costello JM, Wawrousek EF, Zigler JS, Rao VP. Impaired cytoskeletal organization and membrane integrity in lens fibers of a Rho GTPase functional knockout transgenic mouse. Lab Invest. 2004 84(6):679-92.
  10. Okubo T and Hogan BLM.   Hyperactive Wnt signaling changes the developmental potential of embryonic lung endoderm. Journal of Biology 2004 3:11.
  11. Mohn, AR, Yao Wei-Dong,  Caron MG. Genetic and genomic approaches to reward and addiction. Neuropharmacology 2004 47:101-105

2005

  1. Berchuck A, Iversen ES, Lancaster JM, Pittman J, Luo J, Lancaster JM, Pittman J, Luo J, Lee P, Muphy s, Dressman H, Febbo PG, West M, Nevins JR, and Marks JR.   Patterns of Gene ExpressionThat Characterize Long-term Survival in Advanced Stage Serous Ovarian Cancers. Clin Cancer Res  2005 11(10):3686-3696.
  2. Okubo, T, Knoepfler PS, Einman RN, Hogan BLM. Nmyc plays an essential role during lung development as a dosagesensitive regulator of progenitor cell proliferation and differentiation. Development  2005 132:1363-1374.
  3. Karra, R, Vemullapalli S,   Dong C, Herderick EE,.  Song X, Slosek, K, Nevins JR, West M, Goldschmidt-Clermont PJ, and Seo D.   Molecular evidence for arterial repair in atherosclerosis. PNAS 2005 102:16789-16794.
  4. Wang W, Huper G, Guo Y, Murphy SK, Olson J Jr., Marks JR. Analysis of Methylation Sensitive Transcriptome Identifies GADD45a as a Frequently Methylated Gene in Breast Cancer Oncogene 2005 24, 2705-2714.
  5. Mark DeLong, Guang Yao, Quanli Wang, Adrian Dobra, Esther P. Black, Jeffrey T. Chang, Andrea Bild, Mike West, Joseph R. Nevins and Holly Dressman. DIG system for gene annotation and functional discovery. Bioinformatics 2005 21: 2957-2959.
  6. Jeremy N. Rich, Christopher Hans, Beatrix Jones, Edwin S. Iversen, Roger E. McLendon, B.K. Ahmed Rasheed, Adrian Dobra, Holly K. Dressman, Darell D. Bigner, Joseph R. Nevins and Mike West. Gene Expression Profiling and Genetic Markers in Glioblastoma Survival. Cancer Research 2005 65:4051-4058.
  7. John P. Chute, Garrett G. Muramoto, Holly K. Dressman, Gary Wolfe, Nelson, J. Chao,Simon Lin. Molecular profile and partial functional analysis of novel endothelial cell derived growth factors that regulate hematopoiesis. Stem Cells 2005 24:1315-27.
  8. Esther P. Black, Timothy Hallstrom, Holly K. Dressman, Mike West, and Joseph R. Nevins. Distinctions in the specificity of E2F function revealed by gene expression signatures. PNAS 2005 102:15948-15953.
  9. Lawrence M. Boyd, William J. Richardson, Jun Chen, Virginia B. Kraus, Alok Tewari, and Lori A. Setton. Osmolarity regulates gene expression in intervertebral disc cells determined by gene array and real-time quantitative RT-PCR. Annals of Biomedical Engineering 2005 33:1071-1077.
  10. Paloma B. Liton,Xialin Liu, W. Daniel Stamer, Pratap Challa, David L. Epstein, and Pedro Gonzalez. Specific Targeting of Gene Expression to a Subset of Human Trabecular Meshwork Cells Using the Chitinase 3-Like 1 Promoter. Invest Ophthalmol Vis Sci. 2005 46:183-190.
  11. Tal Nawy, Ji-Young Lee, Juliette Colinas, Jean Y.Wang, Sumena C. Thongrod, Jocelyn E. Malamy, Kenneth Birnbaum, and Philip N. Benfey. Transcriptional Profile of the Arabidopsis Root Quiescent Center. The Plant Cell 2005 17:1908-1925.
  12. Dong Wang, Natalie D. Weaver, Meenu Kesarwani, Xinnian Dong. Induction of Protein Secretory. Pathway Is Required for Systemic Acquired Resistance. Science 2005:1036-1040.
  13. Birnbaum K, Jung JW, Wang JY, Lambert GM, Hirst JA, Galbraith DW, Benfey PN. Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines.  Nat Methods. 2005 2:615-9

2006

  1. Liton PB, Luna C, Challa P, Epstein DL, Gonzalez P.  Genome-wide expression profile of human trabecular meshwork cultured cells, nonglaucomatous and primary open angle glaucoma tissue.  Mol Vis 2006  12:774-90.
  2. Bild AH, Yao G, Chang JT, Wang Q, Potti A, Chasse D, Joshi MB, Harpole D, Lancaster JM, Berchuck A, Olson JA, Marks JR, Dressman HK, West M, Nevins JR. Oncogenic pathway signatures in human cancers as a guide to targeted therapies.  Nature, 2006; 439(7074):353-7.
  3. Damodaran TV, Patel AG, Greenfiled ST, Dressman HK, Lin SM, Abou-Donia MB. Gene expression profiles of the rat brain both immediately and 3 months following acute sarin exposure.  Biochem Pharmacol.  2006; 71(4):497-520.
  4. Damodaran TV,  Greenfield ST,  Patel AG, Dressman HK, Lin SM, Abou-Donia MB. Toxicogenomic studies of the rat brain at an early time point following acute sarin exposure.  2006; Neurochem Res. 2006 Mar;31(3):367-81.
  5. Chute JP, Muramoto GG, Dressman HK, Wolfe G, Chaoi NJ, Lin S.  Molecular profile and partial functional analysis of novel endothelial cell derived growth factors that regulate hematopoiesis.  Stem Cells. 2006 May;24(5):1315-27.
  6. Dressman HK, Hans C, Bild A, Marks J, Olson JA, Rosen E, Marcom PK, Liotcheva V, Jones E, Vujaskovic Z, Dewhirst MW, West M, Nevins JR, Blackwell KL.  Gene expression profiles of multiple breast cancer phenotypes and response to neoadjuvant chemotherapy. Clin. Cancer Res, 2006; 12:819-26.
  7. Lux A, Salway F, Dressman HK, Kroener-Lux G, Hafner M, Day PJ, Marchuk DA, Garland J.  ALK1 signaling analysis identifies angiogenesis related genes and reveals disparity between TGF-b and constitutively active receptor induced gene expression.  BMC Cardiovasc Disord, 2006; Apr 4;6(1):13.
  8. Potti A, Mukherjee S, Prince R, Dressman HK, Bild A, Koontz J, Kratzke R, Watson MA, Kelley M, Ginsburg G, West M, Harpole, Jr. DH, Nevins JR.  A genomic strategy to refine prognosis and therapeutic decision for adjuvant therapy in non-small cell lung carcinoma. NEJM, 2006, 355:570-80.
  9. Dressman HK, Bild A, Garst J, Harpole D, Potti A.  Genomic signatures in non-small cell lung cancer: targeting the targeted therapies. Current Oncology Reports 2006. 8:252-257.
  10. Kazmin D, Prytkova T, Cook CE, Wolfinger R, Chu TM, Beratan D, Norris JD, Chang CY, McDonnell DP.    Linking ligand-induced alterations in androgen receptor structure to differential gene expression: a first step in the rational design of selective androgen receptor modulators. Mol Endocrinol. 2006 Jun;20(6):1201-17.
  11. Lancaster JM, Sayer RA, Blanchette C, Calingaert B, Konidari I, Gray J, Schildkraut J, Schomberg DW, Marks JR, Berchuck A.  High expression of insulin-like growth factor binding protein-2 messenger RNA in epithelial ovarian cancers produces elevated preoperative serum levels. Int J Gynecol Cancer. 2006 Jul-Aug;16(4):1529-35.
  12. Mosher RA, Durrant WE, Wang D, Song J, Dong X. A comprehensive structure-function analysis of Arabidopsis SNI1 defines essential regions and transcriptional repressor activity. Plant Cell. 2006 Jul;18(7):1750-65.
  13. Gonzalez P, Epstein DL, Luna C, Liton PB. Characterization of free-floating spheres from human trabecular meshwork (HTM) cell culture in vitro.  Exp Eye Res. 2006 Jun;82(6):959-67.
  14. Lancaster JM, Dressman HK, Clarke JP, Sayer RA, Martino MA, Cragun JM, Henriott AH, Gray J, Sutphen R, Elahi A, Whitaker RS, West M, Marks JR, Nevins JR, Berchuck A. Identification of genes associated with ovarian cancer metastasis using microarray expression analysis. Int J Gynecol Cancer. 2006 Sep-Oct;16(5):1733-45.
  15. Levesque MP, Vernoux T, Busch W, Cui H, Wang JY, Blilou I, Hassan H, Nakajima K, Matsumoto N, Lohmann JU, Scheres B, Benfey PN. Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis.  PLoS Biol. 2006 May;4(5):e143.
  16. Liton PB, Luna C, Challa P, Epstein DL, Gonzalez P. Genome-wide expression profile of human trabecular meshwork cultured cells, nonglaucomatous and primary open angle glaucoma tissue. Mol Vis. 2006 Jul 12;12:774-90.
  17. Bild, A., Potti, A., and Nevins, J. R. Focusing on pathways to address complex biological and clinical phenotypes. Nat. Rev. Cancer  2006 6, 735-741.
  18. Cheng SH, Horng CF, West M, Huang E, Pittman J, Tsou MH, Dressman H, Chen CM, Tsai SY, Jian JJ, Liu MC, Nevins JR, Huang AT.  Genomic prediction of locoregional recurrence after mastectomy in breast cancer. J Clin Oncol. 2006 Oct 1;24(28):4594-602.
  19. Potti, A, Dressman HK, Bild, A, Riedel, RF, Chan, G, Sayer, R, Cragun, J, Cottrill, H, Gray, J, Kelley, MJ, Petersen, R, Harpole, D, Marks, J, Berchuck, A, Ginsburg GS, Febbo, P, Lancaster J, Nevins JR.  A Genomic strategy to guide use of chemotherapeutics in solid tumors.  2006  Nature Medicine, 12(11):1294-300.
  20. Chang, J. T. and Nevins, J. R. GATHER: a systems approach to interpreting genomic signatures. Bioinformatics 2006 22:2926-33.
  21. Wang D, Amornisiripanitch N, Dong X.  A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants.  PLoS Pathog.  2006 2:e123.
  22. Mace DL, Lee JY, Twigg RW, Colinas J, Benfey PN, Ohler U.  Quantification of transcription factor expression from Arabidopsis images.  Bioinformatics 2006  22:e323-31.
  23. Draper DW, Bethea HN, He YW.  Toll-like receptor 2-dependent and –independent activation of macrophages by group B streptococci.  Immunology Letters  2006  102:202-214.
  24. Lee JY, Colinas J, Wang JY, Mace D, Ohler U, Benfey PN  Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots.  PNAS 2006 103:6055-60.

2007

  1. Dressman HK,  Berchuck, A, Chan, G, Zhai, J., Bild A.,  Sayer, R, Cragun, J, Clarke, J, Whitaker, R, Li, L, Gray, J, Marks, J, Ginsburg, GS, Potti, A, West, M, Nevins, J, and Lancater, JM.  An integrated genomic-based approach to personalized treatment of patients with advanced stage ovarian cancer.  J Clin Oncol 2007  25:517-25.
  2. Kong, L.-J., Chang, J., and Nevins, J. R.  Compensation and specificity of function within the E2F family.  Oncogene 2007 26:321-7.

Spotted Arrays

2002

  1. E.D. Jarvis, V.A. Smith, K. Wada, M.V. Rivas, M. McElroy,T.V. Smulders, P. Carninci, Y. Hayashizaki, F. Dietrich, X. Wu, P. McConnell, J. Yu, P.P. Wang, A.J. Hartemink, and S. Lin. A framework for integrating the songbird brain. J Comp Physiol A 2002 188: 961-980.

2004

  1. Weihua Fan, Peter R. Kraus, Marie-Josee Boily, and Joseph Heitman. Cryptococcus neoformans Gene Expression during Murine Macrophage Infection. Eukaryotic Cell 2004 4:1420-1433.
  2. Qin, LX, Kerr, KF and Contributing members of the Toxicogenomics Research Consortium.  Empirical evaluation of data transformations and ranking statistics for microarray analysis.  NAR 2004 32:5471-5479.
  3. Peter R. Kraus, Marie-Jose´e Boily, Steven S. Giles, Jason E. Stajich, Andria Allen, Gary M. Cox, Fred S. Dietrich, John R. Perfect, and Joseph Heitman. Identification of Cryptococcus neoformans Temperature-Regulated Genes with a Genomic-DNA Microarray Eukaryote Cell 2004 3:1249-1260.

2005

  1. Puig S, Askeland, E., Thiele, DJ. Coordinated remodeling of cellular metabolism during iron deficiency through targeted mRNA degradation. Cell 2005 Jan 14:120(1): 99-110.
  2. Members of the Toxicogenomics Research Consortium. Standardizing global gene expression analysis between laboratories and across platforms. Nature Methods 2005 2:1-6.
  3. Jared A. Gollob, Catherine J. Sciambi, Zhiqing Huang and Holly K. Dressman. Gene Expression Changes and Signaling Events Associated with the Direct Antimelanoma Effect of IFN-gamma. Cancer Research 2005 65:8869-8877.
  4. Pukkila-Worley Quincy D. Gerrald, Peter R. Kraus, Marie-Jose´e Boily,Matthew J. Davis, Steven S. Giles, Gary M. Cox, Joseph Heitman,and J. Andrew Alspaugh. Transcriptional Network of Multiple Capsule and Melanin Genes Governed by the Cryptococcus neoformans Cyclic AMP Cascade. Eukaryotic Cell 2005 4:190-201.
  5. Podgoreanu MV, Michelotti GA, Sato Y, Smith MP, Lin S, Morris RW, Grocott HP, Mathew JP, Schwinn DA. Differential cardiac gene expression during cardiopulmonary bypass: ischemia-independent upregulation of proinflammatory genes. J Thorac Cardiovasc Surg. 2005 Aug;130(2):330-9.
  6. Keene JD, Lager PJ.  Post-transcriptional operons and regulons co-ordinating gene expression.  Chromosome Research 2005  13:327-37.  

2006

  1. Potti A, Bild A, Dressman H, Lewis D, Nevins JR, Ortel TL  Gene expression patterns predict phenotypes of immune-mediated thrombosis. Blood, 2006;107:1391-6.
  2. Shianna KV, Marchuk DA, Strand MK.  Genomic characterization of POS5, the Saccharomyces cerevisiae mitochondrial NADH kinase. Mitochondrion. 2006 Apr;6(2):94-101.
  3. Walker JK, Ahumada A, Frank B, Gaspard R, Berman K, Quackenbush J, Schwartz DA. Multistrain genetic comparisons reveal CCR5 as a receptor involved in airway hyperresponsiveness. Am J Respir Cell Mol Biol. 2006 Jun;34(6):711-8.
  4. Gollob JA, Sciambi CJ, Peterson BL, Richmond T, Thoreson M, Moran K, Dressman HK, Jelinek J, Issa JP.  Phase I trial of sequential low-dose 5-aza-2'-deoxycytidine plus high-dose intravenous bolus interleukin-2 in patients with melanoma or renal cell carcinoma. Clin Cancer Res. 2006 Aug 1;12(15):4619-27.
  5. Learn CA, Peter E. Fecci, Robert J. Schmittling, Weihua Xie, Isaac Karikari, Duane A. Mitchell, Gary E. Archer, ZhengZheng Wei, Holly Dressman, and John H. Sampson. Profiling of CD4+, CD8+, and CD4+CD25+CD45RO+FoxP3+ T-cells in Patients with Malignant Glioma Reveals Differential Expression of the Immunologic Transcriptome Compared to T-cells from Healthy Volunteers.  Clinical Cancer Research 2006 12:7306-15.
  6. Dressman HK,  Barley-Maloney, L, Rowlette, LL, Agris, PF, and Garcia-Blanco MA.  Assessing incomplete deprotection of microarray oligonucleotides in situ, NAR 2006 34:e131.
  7. Kwiek NC, Thacker DF, Datto MB, Megosh HB, Haystead TA.  PITK, a PP1 targeting subunit that modulates the phosphorylation of the transcriptional regulator hnRNP K.  Cell Signal. 2006 Oct;18(10):1769-78.
  8. Wada K, Howard JT, McConnell P, Whitney O, Lints T, Rivas MV, Horita H, Patterson MA, White SA, Scharff C, Haesler S, Zhao S, Sakaguchi H, Hagiwara M, Shiraki T, Hirozane-Kishikawa T, Skene P, Hayashizaki Y, Caminci P, Jarvis ED.  PNAS  2006  103:15212-7.
  9. Cramer, KL, Gerrald QD, Nichols CB, Price MS, Alspaugh AJ.  Transcription factor Nrg1 mediates capsule formation, stress response, and pathogenesis in Cryptococcus neoformans.  Eukaryot Cell 2006 5: 1147-1156.

2007

  1. Learn, CA, Peter M. Grossi, Robert J. Schmittling, Weihua Xie, Duane A. Mitchell, Isaac Karikari, ZhengZheng Wei, Holly Dressman, and John H. Sampson.   Genetic Analysis of Intracranial Tumors in a Murine Model of Glioma Demonstrate a Shift in Gene Expression in Response to Host Immunity. Journal of Neuroimmunology 2007 182:63-72.
  2. Hartman ZC, Black EP, Amalfitano A   Adenoviral infection induces a multi-faceted innate cellular immune response that is mediated by the toll-like receptor pathway in A549 cells.    Virology 2007  358:357-72.
  3. Hartman ZC, Kiang A, Everett RS,  Derra D, Yang XY, Clay TM, and Amalfitano A.  Adenovirus infection triggers a rapid, MyD88-Regulated transcriptome response critical to acute-phase and adaptive immune responses in vivo.  Journal of Virology 2007  81:1796-1812.
  4. Himburg HA, Dowd SE, Friedman MH.  The frequency dependent response of the vascular endothelium to pulsatile shear stress.   Am J Physiol Heart Circ Physiol  2007, in press
  5. Levesque BM, Zhou S, Shan L, Johnston P, Kong Y, Degan S, Sunday ME.  NPAS1 regulates branching morphogenesis in embryonic lung.  Am J Respir Cell Mol Biol 2007  36:427-34.
  6. Chadwick BP.  Variation in Xi chromatin organization and correlation of the H3K27me3 chromatin territories to transcribed sequences by microarray analysis.  Chromosoma 2007  116:147-57.
  7. Coveney D, Ross AJ, Slone JD, Capel B.  A microarray analysis of the XX Wnt4 mutant gonad targeted at the identification of genes involved in testis vascular differentiation.  Gene Expr Patterns 2007 7:82-92.
  8. Dressman H, Muramoto GG, Chao NJ, Meadows S, Marshall D, Ginsburg GS, Nevins JR, and Chute J.  Gene expression signatures that predict radiation exposure in mice and humans.  PLoS Medicine 2007  4: 106-